PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00101.2
Common NameAMTR_s00101p00022740
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family AP2
Protein Properties Length: 346aa    MW: 38967.1 Da    PI: 7.1411
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00101.2genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.7e-1251107155
                                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                             s y+GV++++++gr++A+++d  ++n+ ++k+ + g ++ +e Aa  ++ a++k++g
  evm_27.model.AmTr_v1.0_scaffold00101.2  51 SIYRGVTRHRWTGRYEAHLWDkNCWNQvQNKKGRQGAYDDEEAAAHTYDLAALKYWG 107
                                             57*******************99999998888888********************98 PP

2AP2521.7e-16150201155
                                     AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                             s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  evm_27.model.AmTr_v1.0_scaffold00101.2 150 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAAAYDIAAIEYRG 201
                                             89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-1451117IPR016177DNA-binding domain
CDDcd000189.39E-1551117No hitNo description
PfamPF008471.5E-751107IPR001471AP2/ERF domain
SMARTSM003808.4E-1852121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-1252116IPR001471AP2/ERF domain
PROSITE profilePS5103217.96552115IPR001471AP2/ERF domain
PRINTSPR003674.5E-65364IPR001471AP2/ERF domain
CDDcd000185.75E-12150211No hitNo description
SuperFamilySSF541719.15E-18150211IPR016177DNA-binding domain
PfamPF008471.5E-11150201IPR001471AP2/ERF domain
SMARTSM003801.2E-24151215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17151210IPR001471AP2/ERF domain
PROSITE profilePS5103218.465151209IPR001471AP2/ERF domain
PRINTSPR003674.5E-6191211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MERQHSASPA PQVHGDQPPK TTPKPKTRRI RRTVNGDQKR HFGSIPGRRS SIYRGVTRHR  60
WTGRYEAHLW DKNCWNQVQN KKGRQGAYDD EEAAAHTYDL AALKYWGPGT ILNFPLSTYA  120
KELEEMQHLT KEEYLATLRR RSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG  180
TYSTQEEAAA AYDIAAIEYR GLNAVTNFDL SHYIRSPFPQ PTYTFEDSQT PKFPMMASTN  240
FQIPNSDLCD AMVGPEFPSE QTWAPQVDCS FNGLPDSTTF EDIDFLFDNS QEEGVSEEKE  300
AKGNVDNTLQ ASGSSEGGRE AMGLNHGDMS SMNSISYPCP ISICS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011620741.10.0PREDICTED: ethylene-responsive transcription factor WRI1
SwissprotQ6X5Y64e-99WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLW1NUQ90.0W1NUQ9_AMBTC; Uncharacterized protein
STRINGGSMUA_Achr8P09350_0011e-106(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.38e-84AP2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]